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"ProteinCenter is a great bioinformatics tool to analyze (such as sorting, comparing, categorizing and presenting) results of large scale proteomics studies. In addition, it provides a centralized platform for quick and easy access to various public and customized databases."
Dr. Hua Liao
"ProteinCenter has really been a huge part of streamlining the data analysis process, and the ability for comparisons is really essential"
Rebekah L. Gundry, PhD, Bayview Proteomics Research Center
“ProteinCenter is an essential tool for rapid biological interpretation of complex proteomics datasets. The precomputed annotations on proteins allows easy filtering of results. As an example, when searching for a secreted protein from a cell line we identified over 2000 proteins from conditioned media. The project team only knew the approximate size of the protein and the related biology. From ProteinCenter we filtered the proteins for those containing a signal peptide, GO annotation as extracellular, and number of amino acids. From >2000 proteins the list was narrowed to 3 proteins in just a few clicks and one of those had the biology the team was looking for. Before ProteinCenter, our standard analysis of 10000 proteins per sample was difficult and time consuming to extract biological interpretation from. ProteinCenter facilitates the interface of where proteomics delivers on biological analysis.”
Dr. Mark Daniels, Clinical Trial Manager
“My lab is using ProteinCenter for approximately one year now and it has turned out to be extremely useful for us. Although, our lab has considerable bioinformatics expertise there are several key features of ProteinCenter which made this tool extremely useful to us. Among the many features of ProteinCenter, especially the following tools are frequently used by us:
1) The efficient cross-comparison of different datasets
All in all, ProteinCenter is a one-stop-shop for detailed bioinformatics mining of extensive proteomics data in a highly efficient and streamlined manner. I can highly recommend this tool to both the experienced proteomics laboratory and the first timer trying to make sense of their first proteomics experiments.”
Dr. Thomas Kislinger, Division of Cancer Genomics and Proteomics
"ProteinCenter optimized my workflow from analyzing 4 samples per week to 20 samples per week."
Dr. J. S. Rees, Cambridge Centre for Proteomics, UK
"ProteinCenter helped my to quickly verify a sample preparation method via its comprehensive biological annotations."
K. Poulsen, Statens Serum Institut, Denmark
"ProteinCenter enables us to gain biological insights from large-scale proteomics experiments within minutes.
Professor Ole Nørregard Jensen, Protein Research Group, University of Southern Denmark
"With ProteinCenter's Gene Ontology functionality, I got biological insights into my experiments."
W. Pluk, Nijmegen Proteomics Facility, The Netherlands
"ProteinCenter enabled us to jump three months ahead of plan on our project."
Dr. Christoph Rösli, Department of Chemistry and Applied Biosciences, ETH Zurich
"ProteinCenter has definitely been useful and is a major time saver."
Rick T. Dobrowsky, Ph.D. Professor, Department of Pharmacology and Toxicology, University of Kansas, USA
"Using ProteinCenter I retrieved detailed information on my long list of validated proteins in just a few minutes.
Tine E. Thingholm, Ph.D., Klinik for Molekylær Endokrinologisk Behandling (KMEB), Odense Universitets Hospital (OUH), Danmark