ProteinCenter
ProteinCenter is a web-based tool that enables scientists to compare and interpret proteomics data sets in minutes and overcomes the hurdle of proteins existing under different names and accession keys in different databases. Regularly updated from all major protein databases, ProteinCenter provides a consolidated, biologically annotated, protein sequence database to enable filtering, clustering and statistical bioinformatic analysis from single, combined or comparison data sets.
Based on user feedback, ProteinCenter is regularly updated with new and improved functions and features.  Listed below are some of the key features included in the most recent versions:
ProteinCenter 3.2

  • Heatmaps to display quantitative data aggregated on protein or biological annotation level

  • Expression profiling at annotation level, e.g. match quantitative data on KEGG pathways

  • Export of statistics results directly into CSV files

  • Direct support of the Iprophet and Proteome Discoverer xml-formats

  • 'Most-used' modifications now recognized in Spectrum Mill

  • Encoded modifications in peptide sequences  included in CSV  format
  • Modification information can be imported from "evidence.txt" file in MaxQuant.
ProteinCenter 3.1

  • Customizable views in Exp. Data-, Peptides-, Proteins- and Cluster-view enables selection of columns for display

  • Perform expression profiling on groups of proteins.

  • Optimized export function

  • Report functionality includes Gene Ontology slim

  • Peptide Venn diagrams

ProteinCenter 3.0

  • Supports more data formats - import Mascot Distiller XML files and MaxQuant data

  • Separate view for working with peptide data includes sorting and filtering

  • Import data from user-defined quantitative methods in Mascot XML

  • 'Per-column' selection prevents export of unwanted data, resulting in better performance.

ProteinCenter 2.8

  • Profiling includes grouping by quantitative data on the peptide level and across data sets in a comparison

  • Display of basic protein sequence and annotation counts for current data release

  • Execute "Empty recycle bin" clean-up procedure from μLIMS page

ProteinCenter 2.7

  • Profiling - group proteins based on supplementary information such as quantitative data

  • Import files in the peptide summary format from ProteinPilot

ProteinCenter 2.6

  • Upload data from Phenyx software directly to ProteinCenter

  • Warning icon displayed when an application or license update is available

  • Import of more quantitative values such as iTRAQ8

  • Import files in protein summary format from ProteinPilot

  • Support for more quantitative methods in Mascot XML

Login to see local pricing where available.->
No web account? Get one here.
  
Product Order Code
Short-term ASP access
PC100
Single user license for ASP access
PC201
Dual user license for ASP access
PC202
Five-user license for ASP access
PC205
Single user license, monthly subscription
PC301
Dual user license, monthly subscription
PC302
Five-user license, monthly subscription
PC305
Pre-installed Linux-based server for ProteinCenter
PC400
Perpetual ProteinCenter license - 1 user
PC501
Perpetual ProteinCenter license - 2 users
PC502
Perpetual ProteinCenter license - 5 users
PC505
Proxeon is not responsible for typographical errors.